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Nearly three-quarters of virus genomes sequenced last month were of new variant, say South African health officials.

The Omicron variant has fuelled a “worrying” surge in coronavirus cases in South Africa and is rapidly becoming the dominant strain, local health officials have said, as more countries including the US detected their first cases of the new strain.

The United Arab Emirates and South Korea – which is already battling a worsening outbreak and record daily infections – also confirmed cases of the Omicron variant.
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Dr Michelle Groome of South Africa’s National Institute for Communicable Diseases (NICD) said there had been an “exponential increase” in infections over the past two weeks, from a weekly average of around 300 new cases per day to 1,000 last week, and most recently 3,500. On Wednesday, South Africa recorded 8,561 cases. A week earlier, the daily tally was 1,275.

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The NICD said 74% of all the virus genomes it had sequenced last month had been of the new variant, which was first found in a sample taken on 8 November in Gauteng, South Africa’s most populous province.

While key questions remain about how transmissible the Omicron variant is, which has been detected in at least two dozen countries around the world, experts are rushing to determine the level of protection afforded by vaccines. World Health Organization (WHO) epidemiologist Maria van Kerkhove told a briefing that data on how contagious Omicron was should be available “within days”.

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The NICD said early epidemiological data showed Omicron was able to evade some immunity, but exisiting vaccines should still protect against severe disease and death. BioNTech’s chief executive, Uğur Şahin, said the vaccine it makes in a partnership with Pfizer was likely to offer strong protection against severe disease from Omicron.

As governments wait for a fuller picture to emerge, many continued to tighten border restrictions in the hope of stopping the virus spread.

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South Korea imposed more travel curbs as it detected its first five Omicron cases and fears grew about how the new variant could affect its ongoing Covid surge.

Authorities halted quarantine exemptions for fully vaccinated inbound travellers for two weeks, who now require a 10-day quarantine.

Earlier this month restrictions were eased in the country – which has fully vaccinated nearly 92% of adults – however infections have surged since and the presence of Omicron has fuelled fresh worries about pressure on the already strained hospital system.

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In Europe, the president of the European Union’s executive body said there was a “race against time” to stave off the new variant while scientists established how dangerous it is. The EU brought forward the start of its vaccine rollout for five-to-11-year-olds by a week, to 13 December.

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Britain and the United States have both expanded their booster programs in response to the new variant, while Australia is reviewing its schedule.

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Top American infectious diseases specialist Anthony Fauci stressed that fully vaccinated adults should seek a booster when eligible to give themselves the best possible protection.

Still, the WHO has noted many times that the coronavirus will keep producing new variants for as long as it is allowed to circulate freely in large unvaccinated populations.

“Globally, we have a toxic mix of low vaccine coverage, and very low testing – a recipe for breeding and amplifying variants,” said WHO chief Tedros Adhanom Ghebreyesus, reminding the world that the Delta variant “accounts for almost all cases”.

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